What we found was the deduplication was corrupting the OneNote index (toc) on the server and each time someone went to make changes to the OneNote file on the server. It is a form of compression at its simplest which is to say it is a mechanism to allow you to stick more stuff on a computer or server disk. At its simplest, it is a way to reduduplicate files and similar streams of data on a disk. The cause as it turned out was something called Windows Deduplication. It is especially prevalent when they moved to OneNote 2016. Recently, a customer I work with asked me to investigate why the tabs in their shared OneNote notebooks were disappearing.
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